![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010106246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55059.5 Da PI: 9.4563 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_010106246.1 89 FICEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_010106246.1 165 WKCDKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 88 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.09E-7 | 88 | 111 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.1E-5 | 89 | 111 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.022 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 130 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 152 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.09E-7 | 160 | 185 | No hit | No description |
SMART | SM00355 | 140 | 165 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MMLFQHQQPP QADENMSNLT SASGEASVSS GNKNEIGNNN NNYPQQYFSP VQAQTQQPPK 60 KKRNLPGNPD PDAEVIALSP KSLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 ASKEVKKKVY VCPEASCVHH DPARALGDLT GVKKHFCRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEES VRAMTTNNPA GPVVLLNNPN 240 SSSSTLSHHH MINLQQTQLD NLNAFSLKKQ HQDFSSSTAA VTATTLPPWL GPAQIDLSSS 300 SPSIFSNTRS AITTTLDHHH EDFTISNPNP SPLGPAANLP ATTFQTLQSP PPPPSAHMSA 360 TALLQKAAQM GATMSGSKAT VACRPHQAHV SSPSSAAVTT NSSTTATGLN LSSSRDHHQH 420 YQKDQTVTHA LAPNSFLQDM MMSSLPSVNG GNTTGRGDNG GSGEGLTRDF LGLRAFSHSD 480 ILSIAGLGNG INISRDHQSN QPQKPW |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106246.1 | 0.0 | hypothetical protein L484_005111 | ||||
TrEMBL | W9S1P3 | 0.0 | W9S1P3_9R | ||||
STRING | VIT_09s0002g02300.t01 | 1e-169 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-119 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21388591 |